PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG009717.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 320aa    MW: 33914.6 Da    PI: 9.4788
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG009717.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP123.32.8e-3876160286
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 
                  a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i ++tg+++++as+    +    s++  s
  CCG009717.1  76 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIVAATGSGTIPASALaA-AGGAISQQGAS 160
                  789******************************************************************88853.33333333222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-3081170IPR005333Transcription factor, TCP
PROSITE profilePS5136927.64482136IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MDPKGSNSKN PHELPTFLTH THPSPPHPPP QTHLQQSQQL HSQNQQQPNM GDNKPSEIKD  60
FQIVVADKEE QKKQLAPKRS SNKDRHTKVE GRGRRIRMPA LCAARIFQLT RELGHKSDGE  120
TIQWLLQQAE PSIVAATGSG TIPASALAAA GGAISQQGAS LSAGLHQKID DLGGSSSSRA  180
SWAMLGGNLG RPHHVTTAGL WPPVGGYGFQ SSSNSTGPST TNIGTEAAAA GGSSYLQKIG  240
FPGFDLPSNN MGPMSFTSIL GGGTQQLPGL ELGLSQDGHI GVLSPQALNQ IYQQMGHARV  300
HQQQHQQQNP SKDDSQGSGQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00636PBMTransfer from Glyma.19G095300Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2156320.0AC215632.1 Populus trichocarpa clone POP074-O07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011000960.10.0PREDICTED: transcription factor TCP20
SwissprotQ9LSD55e-86TCP20_ARATH; Transcription factor TCP20
TrEMBLB9GF500.0B9GF50_POPTR; TCP family transcription factor family protein
STRINGPOPTR_0001s33470.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33393269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.18e-75TCP family protein